Send Data from Genomica to GenePattern

If GenomeSpace does not know how to convert a file you are sending, it will display the  icon next to the file name. You can still send the file, but the receiving tool may not be able to accept it.

1. Send your file from Genomica to GenomeSpace.

  1. Select GenomeSpace>Save to GenomeSpace.

  1. In the file browser, select the GenomeSpace directory where you want the data file to be saved, enter a file name, and click Save As.

2. Send file from GenomeSpace to GenePattern.

  1. Left-click on the file you just uploaded from Genomica and select GenePattern

  1. In the dialog box, click Launch.

3. Save the file in GenePattern.

  1. Click Sign in Using GenomeSpace.
  2. You will be presented with the choice Save a Copy: Upload Directory.
  3. Click Submit.  You can now use this file from your GenePattern Uploads tab.
    • OR, where it says Send to Module as, you can select a module from the drop-down menu and click Submit.  This will add the file to the appropriate parameter field in the selected module.

<< Send Data from GenePattern to IGV | Up | >>