Frictionless connection of bioinformatics tools

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10.09.15 07:00AM General

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Gene Networks in Cancer

See how you can use GenomeSpace to carry out a rich, multi-data type, multi-tool computational analysis without programming at "Gene Networks in Cancer”. This tutorial describes the end-to-end workflow for GenomeSpace’s driving biological project, which identifies and visualizes gene regulatory networks in human cancer stem cells as previously published in Wong et al. 2008, and Ben-Porath et al. 2008.  More >>

GenomeSpace at ASHG 2015, Baltimore

Find out more about GenomeSpace at the 2015 American Society of Human Genetics (ASHG) meeting in Baltimore, October 6 to 10. Look for us at an (room 337) on Friday, October 9 at 7:15 AM, and contact us ( if you want to meet to discuss how GenomeSpace can help you.  More >>

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Calling the GenomeSpace API from Python

For today's technology tidbit, we're going to explore how to call the GenomeSpace REST-ful web interfaces from the Python programming language.  (Full disclosure: this was my first attempt to use Python so I am sure there are stylistic issues and more elegant ways to do this).   More >>

Cytoscape Updated to version 3.2.1

We are pleased to announce that Cytoscape 3 in GenomeSpace has been updated to version 3.2.1. If you are already using an older version of Cytoscape 3, including the prior v3.1.1, manually upgrade to v3.2.1 using the installer at Upgrade is highly recommended. Once installed, the Cytoscape 3 tool icon will launch v3.2.1 from GenomeSpace. See full details in the Cytoscape v3.2.1 Release Notes.  More >>

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