The GenomeSpace project is ending

The GenomeSpace project ends on November 15, 2019 due to expiration of its NHGRI funding and we will be shutting down the GenomeSpace servers on that date. We would like to thank all GenomeSpace users for their support and for all the important science they have done on the platform over the last nine years. 

 

GenomeSpace-enabled tools are separately funded and will continue to be available subject to their own lifecycles, but any connection to GenomeSpace or GenomeSpace-hosted files will cease with the termination of the servers. If you do not remember your login credentials for any individual tools that you rely on, you should use the ‘forgot password’ links on their websites to reset your login credentials.

 

NOTE: We are unable to archive any data you have in your GenomeSpace account.  Therefore, if you wish to retain copies of such data you should transfer them to your own storage from GenomeSpace before the termination date. After that time they will be deleted from the GenomeSpace servers as part of the shutdown process. Data that you host on other platforms (Dropbox, S3, Google Drive) and have connected to your GenomeSpace account will not be affected.

If you have any questions, please contact the GenomeSpace team at gs-help@broadinstitute.org.

The GenomeSpace Team

 

 

Webinar Recording Available

Thank you to those of you who joined us for our GenomeSpace orientation webinar on October 24, 2016. If you missed the webinar, don't worry! A recording of the webinar is available on our YouTube channel. While you're there, check out our recipe videos and other helpful guides.

For future reference, links to webinar recordings will be made available in the webinar event descriptions on the GenomeSpace calendar.

GenomeSpace at ISMB & BOSC, 2016

Find out more about GenomeSpace at the  Intelligent Systems for Molecular Biology (ISMB) conference in Orlando. July 10-12, 2016 and its satellite conference  17th Annual Bioinformatics Open Source Conference (BOSC) on July 8th and 9th.  The GenomeSpace team will be presenting a Technology Track talk and a poster.

 
GenomeSpace Talks:

ISMB Talk: Tuesday July 12, from 11:40-12:00 EDT.
BOSC Talk: Friday July 8, from 10:45-11:03 EDT.
 
GenomeSpace Posters:
 
ISMB Poster: Monday July 11, from 17:40-19:30 EDT. Poster #E06.
BOSC Poster: Friday July 8 and Saturday July 9, from 13:00-14:00 EDT. Poster #1.
 

Recipe Webinar rescheduled to June 27, 2016

We have rescheduled our recipe webinar to June 27, 2016 from 2:00-3:00PM EST (18:00-19:00 UTC/GMT). We will cover how to Find differentially expressed genes in RNA-Seq data using GenomeSpace, the UCSC Genome Browser, GenePattern, and IGV. Click here to sign up now! Check out the GenomeSpace Calendar of Events for upcoming webinar, office hours, and other outreach events.

GenomeSpace paper published in Nature Methods

The GenomeSpace paper appeared online in Nature Methods on January 18, 2016. The paper is available to view at Nature Methods.

Contribute a recipe

We welcome contributions to our recipe collection. To contribute a recipe, or if you have suggestions for new recipes, please contact us at gs-recipes@broadinstitute.org.

Gene Networks in Cancer

See how you can use GenomeSpace to carry out a rich, multi-data type, multi-tool computational analysis without programming at "Gene Networks in Cancer”. This tutorial describes the end-to-end workflow for GenomeSpace’s driving biological project, which identifies and visualizes gene regulatory networks in human cancer stem cells as previously published in Wong et al. 2008, and Ben-Porath et al. 2008.

GenomeSpace at ASHG 2015, Baltimore

Find out more about GenomeSpace at the 2015 American Society of Human Genetics (ASHG) meeting in Baltimore, October 6 to 10. Look for us at an (room 337) on Friday, October 9 at 7:15 AM, and contact us (gs-help@broadinstitute.org) if you want to meet to discuss how GenomeSpace can help you.

GenomeSpace at the 3rd CEGS Computational Workshop

Find out more about GenomeSpace and GenePattern at the Center for Cell Circuits Computational Genomics Workshop, September 30 & October 1, 2015 at the Broad Institute. Look for us on day 2, Thursday October 1 for hands-on training.

GenomeSpace at AACR 2015, Philadelphia

Find out more about GenomeSpace at the 2015 Annual Americal Association for Cancer Research meeting in Philadelphia, April 18-22. Look for us in Poster Section 5 on Wednesday, April 22, 2015, from 8:00 AM to 12:00 PM, and contact us if you want to meet to discuss how you can use GenomeSpace can help you.

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