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A cistrome is defined as the set of cis-acting targets of a trans-acting factor on a genome scale. The Cistrome project integrates ChIP-chip/seq data for a cistrome with standard analysis pipelines, while  providing users with a user-friendly, powerful, flexible web interface with which they can access the data and pipelines.

In addition to the standard Galaxy functions, Cistrome has 29 ChIP-chip- and ChIP-seq-specific tools in three major categories, from preliminary peak calling and correlation analyses, to downstream genome feature association, gene expression analyses, and motif discovery.

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